Organic Synthetic Chemistry,
Cheminformatcs,
Machine Learning,
Computer Aided Drug Discovery

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Shogo Nakamura

Running AutoDock Vina via MCP

May 25, 2025 Drug Discovery

MCPでAutoDock Vinaを動かす

May 25, 2025 Drug Discovery

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Recent Posts

Conditional Generation in Diffusion Models
拡散モデルにおける条件付き生成
Fundamentals of Diffusion Models (Noise Prediction and Score Matching)
拡散モデルの基礎（ノイズ予測とスコアマッチング）
Fundamentals of Diffusion Models
拡散モデルの基礎
VAE
VAE
Optimizers
オプティマイザ
Error Function and Effective Learning Rate
誤差関数と実効学習率
KL Divergence and EM Algorithm
KLダイバージェンスとEMアルゴリズム
Notes on Deep Learning from Scratch 5 (Steps 1–4)
ゼロから作るDeep Learning 5 のメモ (ステップ1-4)
Creating Anki Flashcards with MCP via LLM
AnkiのカードをLLMに作ってもらうMCP
Translate PDFs without breaking layout using PLaMo translate (macOS)
PLaMo翻訳を使ってPDFのレイアウトを崩さずに翻訳(mac OS)
Running AutoDock Vina via MCP
MCPでAutoDock Vinaを動かす

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